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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs1722410 chr2:16892605 A/T TFDP3 chrX:132350697-132352376:- 1.14 9.24 1.48E-12 Box Plot
ACC rs1722411 chr2:16893422 A/G TFDP3 chrX:132350697-132352376:- 1.13 9.22 1.58E-12 Box Plot
ACC rs1722413 chr2:16894116 G/C TFDP3 chrX:132350697-132352376:- 1.14 9.24 1.48E-12 Box Plot
ACC rs1722419 chr2:16882850 A/G TFDP3 chrX:132350697-132352376:- 1.14 9.24 1.48E-12 Box Plot
ACC rs172407 chr3:59731511 G/T XIST chrX:73040486-73072588:- -0.49 -7.71 3.61E-10 Box Plot
ACC rs17246626 chr6:52130312 G/T OR6C3 chr12:55725485-55726420:+ 0.9 7.64 4.7E-10 Box Plot
ACC rs1728802 chr3:11066520 C/T GAGE2D chrX:49207160-49214420:+ 0.52 7.62 5.18E-10 Box Plot
ACC rs17422703 chr1:5327147 C/T OR6C3 chr12:55725485-55726420:+ 0.72 7.87 2.03E-10 Box Plot
ACC rs17542175 chr17:32521884 T/C TFDP3 chrX:132350697-132352376:- 0.99 8.59 1.52E-11 Box Plot
ACC rs1754626 chr14:21977672 G/T PRAMEF16 chr1:13495254-13498260:+ 0.73 8.12 8.14E-11 Box Plot
ACC rs17684516 chr18:37101243 G/C PRHOXNB chr13:28552243-28562774:- 0.7 9.18 1.85E-12 Box Plot
ACC rs17692448 chr13:59659517 A/C SERPINB9 chr6:2887500-2903514:- 1.32 8.15 7.4E-11 Box Plot
ACC rs17706762 chr17:4873963 G/T GPR128 chr3:100328433-100414323:+ 0.58 7.74 3.24E-10 Box Plot
ACC rs17771193 chr17:21005471 C/T KRT6C chr12:52862300-52867569:- 0.8 7.82 2.49E-10 Box Plot
ACC rs17868226 chr2:51950738 C/G PRAMEF16 chr1:13495254-13498260:+ 0.77 7.81 2.51E-10 Box Plot